PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g04620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LSD
Protein Properties Length: 88aa    MW: 9511.45 Da    PI: 8.3686
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g04620genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1499.8e-16832125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggCrtlL+ PrGA+sVRCa+C+tV
  CA02g04620  8 CGGCRTLLMHPRGATSVRCACCHTV 32
                ************************9 PP

2zf-LSD141.42.4e-134669124
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                Cg+Crt+L+YP GApsV+Ca+C+ 
  CA02g04620 46 CGNCRTMLMYPCGAPSVKCAICHC 69
                **********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.1E-18535IPR005735Zinc finger, LSD1-type
PfamPF069437.7E-14832IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.1E-144373IPR005735Zinc finger, LSD1-type
PfamPF069435.0E-124669IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MEMAQLICGG CRTLLMHPRG ATSVRCACCH TVNLVPGPNQ FAHVNCGNCR TMLMYPCGAP  60
SVKCAICHCI THISVRISPF FGFLILW*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755144e-39HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016558000.13e-48PREDICTED: protein LSD1-like
RefseqXP_016557999.13e-48PREDICTED: protein LSD1-like
SwissprotQ6ASS21e-30LOL3_ORYSJ; Protein LOL3
TrEMBLA0A0V0HPW96e-47A0A0V0HPW9_SOLCH; Uncharacterized protein
STRINGSolyc02g069720.2.19e-42(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.11e-30lsd one like 1